miRBase entry: cfa-mir-20a

Stem-loop cfa-mir-20a

Accession

MI0008052

Description

Canis familiaris cfa-mir-20a precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuguuucguuaucuacugcauuaugagcacuuaaagu
..(((((((((((((((((.(((...........)))))))))))))))))))).....

Structure

---UA                 G   uguu 
     AAGUGCUUAUAGUGCAG UAG    u
     ||||||||||||||||| |||    c
     uucacgaguauuacguc auc    g
ugaaa                 -   uauu

Annotation confidence Not enough data

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Genome context

chr22: 42478462-42478520 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-20a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-20a

Accession	MIMAT0006651
Description	Canis familiaris cfa-miR-20a mature miRNA
Sequence	1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415