miRBase entry: cfa-mir-99a-1

Stem-loop cfa-mir-99a-1

Accession

MI0008075

Description

Canis familiaris cfa-mir-99a-1 precursor miRNA

Sequence

AACCCGUAGAUCCGAUCUUGUggugaaguggacggcacaagcucgcuucuaugggucug
.(((((((((..(((.((((((.((.......)).)))))).)))..)))))))))...

Structure

--A         UC   U      g  aa 
   ACCCGUAGA  CGA CUUGUg ug  g
   |||||||||  ||| |||||| ||  u
   uggguaucu  gcu gaacac gc  g
guc         uc   c      g  ag

Annotation confidence Not enough data

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Genome context

chr31: 13258782-13258840 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-99a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-99a

Accession	MIMAT0006668
Description	Canis familiaris cfa-miR-99a mature miRNA
Sequence	1 - AACCCGUAGAUCCGAUCUUGU - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415