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miRBase entry: ptr-mir-1281
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ptr-mir-1281
Accession
MI0008480
Description
Pan troglodytes
ptr-mir-1281 precursor miRNA
Gene family
MIPF0000695;
mir-1281
Sequence
gggggcaccgggaggaggugagugucucuugUCGCCUCCUCCUCUCCCcccuu
(((((....((((((((((((..........))))))))))))...)))))..
Structure
-- cacc gugu ggggg gggaggagguga c ||||| |||||||||||| cccCC UCCUCCUCCGCU u uu -CUC guuc
Annotation confidence
Not enough data
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Genome context
chr22: 27750246-27750298 [+]
Database links
Mature
ptr-miR-1281
Accession
MIMAT0008000
Description
Pan troglodytes
ptr-miR-1281 mature miRNA
Sequence
32 - UCGCCUCCUCCUCUCCC - 48
Evidence
not_experimental
References
PubMed ID:
18760970
Computational identification of novel microRNA homologs in the chimpanzee genome
"Baev V, Daskalova E, Minkov I"
"Comput Biol Chem (2009) 33:62-70