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miRBase entry: ptr-mir-1825
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ptr-mir-1825
Accession
MI0008559
Description
Pan troglodytes
ptr-mir-1825 precursor miRNA
Sequence
gagacuggggugcugggcuccccuagacuaggacUCCAGUGCCCUCCUCUCC
((((..(((((((((((.(((.........))).)))))))))))..)))).
Structure
- cu c ccu gaga ggggugcuggg ucc a |||| ||||||||||| ||| g CUCU UCCCGUGACCU agg a C CC c auc
Annotation confidence
Not enough data
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Genome context
chr20: 33602001-33602052 [+]
Database links
Mature
ptr-miR-1825
Accession
MIMAT0008051
Description
Pan troglodytes
ptr-miR-1825 mature miRNA
Sequence
35 - UCCAGUGCCCUCCUCUCC - 52
Evidence
not_experimental
References
PubMed ID:
18760970
Computational identification of novel microRNA homologs in the chimpanzee genome
"Baev V, Daskalova E, Minkov I"
"Comput Biol Chem (2009) 33:62-70