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miRBase entry: ptr-mir-320d-3
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ptr-mir-320d-3
Accession
MI0008614
Description
Pan troglodytes
ptr-mir-320d-3 precursor miRNA
Sequence
uucucuucccaguucuucuuggagucaggAAAAGCUGGGUUGAGAGG
(((((..(((((((.((((((....)))))).)))))))..))))).
Structure
- uu c g uucuc cccaguu uucuug a ||||| ||||||| |||||| GAGAG GGGUCGA AAggac g G UU A u
Annotation confidence
Not enough data
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Genome context
chrX: 140909878-140909924 [-]
Database links
Mature
ptr-miR-320d
Accession
MIMAT0008096
Description
Pan troglodytes
ptr-miR-320d mature miRNA
Sequence
30 - AAAAGCUGGGUUGAGAGG - 47
Evidence
not_experimental
References
PubMed ID:
18760970
Computational identification of novel microRNA homologs in the chimpanzee genome
"Baev V, Daskalova E, Minkov I"
"Comput Biol Chem (2009) 33:62-70