miRBase entry: dan-mir-4

Stem-loop dan-mir-4


Accession
MI0008964
Description
Drosophila ananassae dan-mir-4 precursor miRNA


Sequence

uugcaauuaguuucuuuggucguccagccuuaggugacuucucugaucAUAAAGCUAGACAACCAUUGAaguucguugugg
..(((((.((((((..((((.(((.(((.((((((.(......).))).))).))).))).))))..)))))).)))))..

Structure
uu     u      uu    c   c   c   -   g cu 
  gcaau aguuuc  uggu guc agc uua ggu a  u
  ||||| ||||||  |||| ||| ||| ||| ||| |   
  uguug uugaAG  ACCA CAG UCG AAU cua u  c
gg     c      UU    A   A   A   A   g cu 


Annotation confidence Not enough data
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Genome context
scaffold_13266: 9731523-9731603 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dan-mir-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-4

Accession MIMAT0008427
Description Drosophila ananassae dan-miR-4 mature miRNA
Sequence 49 - AUAAAGCUAGACAACCAUUGA - 69
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218