miRBase entry: dan-mir-5

Stem-loop dan-mir-5

Accession

MI0008994

Description

Drosophila ananassae dan-mir-5 precursor miRNA

Sequence

uaAAAGGAACGAUCGUUGUGAUAUGcguuuaucccucguuacauaucacagugauuuuccuuuauaa
..(((((((.(((((((((((((((((.........))...))))))))))))))))))))))....

Structure

--ua       C               ---  uuu 
    AAAGGAA GAUCGUUGUGAUAUG   cg   a
    ||||||| |||||||||||||||   ||   u
    uuuccuu uuagugacacuauac   gc   c
aaua       -               auu  ucc

Annotation confidence Not enough data

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Genome context

scaffold_13266: 9731682-9731748 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dan-mir-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dan-miR-5

Accession	MIMAT0008457
Description	Drosophila ananassae dan-miR-5 mature miRNA
Sequence	3 - AAAGGAACGAUCGUUGUGAUAUG - 25
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218