miRBase entry: dan-mir-125

Stem-loop dan-mir-125


Accession
MI0009011
Description
Drosophila ananassae dan-mir-125 precursor miRNA


Sequence

gacaugugcaaauguuuguauggcugauUCCCUGAGACCCUAACUUGUGAcuuuuaauaccaguuucacaaguuuugaucuccgguauuggacgcaaacuugcugauguu
(((((..((((..((((((....(((((..((.((((.(..(((((((((...............)))))))))..).)))).)).)))))..))))))))))..)))))

Structure
     gu    au      augg     UC  U    C CU         cuuuua 
gacau  gcaa  guuugu    cugau  CC GAGA C  AACUUGUGA      a
|||||  ||||  ||||||    |||||  || |||| |  |||||||||      u
uugua  cguu  caaacg    gguua  gg cucu g  uugaacacu      a
     gu    --      --ca     -u  c    a uu         uugacc 


Annotation confidence Not enough data
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Genome context
scaffold_12916: 2379476-2379585 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dan-mir-125
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-125

Accession MIMAT0008473
Description Drosophila ananassae dan-miR-125 mature miRNA
Sequence 29 - UCCCUGAGACCCUAACUUGUGA - 50
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218