Stem-loop dvi-mir-317

Accession

MI0009515

Description

Drosophila virilis dvi-mir-317 precursor miRNA

Sequence

ugcaauugccgcUGGGAUACACCCUGUGCUCGCUuugaauugugcaagcaagUGAACACAGCUGGUGGUAUCCAGUggccguuggc
..((((.(((((((((...(((((((((.(((((......(((....)))))))).)))))..))))...))))))))).))))..

Structure

ug    u         AUA    --     C     uugaau   g 
  caau gccgcUGGG   CACC  CUGUG UCGCU      ugu c
  |||| |||||||||   ||||  ||||| |||||      |||  
  guug cggUGACCU   GUGG  GACAC AGUga      acg a
cg    c         AUG    UC     A     ------   a 

Annotation confidence Not enough data

Genome context

scaffold_12855: 2698541-2698626 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-317

Mature dvi-miR-317-3p

• Accession: MIMAT0008947
• Description: Drosophila virilis dvi-miR-317-3p mature miRNA
• Sequence: 53 - UGAACACAGCUGGUGGUAUCCAGU - 76
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-317-5p

• Accession: MIMAT0032073
• Description: Drosophila virilis dvi-miR-317-5p mature miRNA
• Sequence: 13 - UGGGAUACACCCUGUGCUCGCU - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372