miRBase entry: dvi-mir-317

Stem-loop dvi-mir-317

Accession

MI0009515

Description

Drosophila virilis dvi-mir-317 precursor miRNA

Sequence

ugcaauugccgcUGGGAUACACCCUGUGCUCGCUuugaauugugcaagcaagUGAACACAGCUGGUGGUAUCCAGUggccguuggc
..((((.(((((((((...(((((((((.(((((......(((....)))))))).)))))..))))...))))))))).))))..

Structure

ug    u         AUA    --     C     uugaau   g 
  caau gccgcUGGG   CACC  CUGUG UCGCU      ugu c
  |||| |||||||||   ||||  ||||| |||||      |||  
  guug cggUGACCU   GUGG  GACAC AGUga      acg a
cg    c         AUG    UC     A     ------   a

Annotation confidence Not enough data

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Genome context

scaffold_12855: 2698541-2698626 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-317

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-317-3p

Accession	MIMAT0008947
Description	Drosophila virilis dvi-miR-317-3p mature miRNA
Sequence	53 - UGAACACAGCUGGUGGUAUCCAGU - 76
Evidence	experimental Illumina [2]

Mature dvi-miR-317-5p

Accession	MIMAT0032073
Description	Drosophila virilis dvi-miR-317-5p mature miRNA
Sequence	13 - UGGGAUACACCCUGUGCUCGCU - 34
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372