miRBase entry: dvi-mir-2b

Stem-loop dvi-mir-2b

Accession

MI0009518

Description

Drosophila virilis dvi-mir-2b precursor miRNA

Literature search

1 open access papers mention dvi-mir-2b
(1 sentences)

Sequence

uugugucaUUCUUCAAAGUGGUUGUGAAAUGuuugccuuuuuaugccuacucaUAUCACAGCCAGCUUUGAGGAGCgacacga
(((((((.(((((((((((((((((((.(((...((........)).....))).))))))))).)))))))))).)))))))

Structure

       a          -         A   --uuu  cuu 
uuguguc UUCUUCAAAG UGGUUGUGA AUG     gc   u
||||||| |||||||||| ||||||||| |||     ||    
agcacag GAGGAGUUUC ACCGACACU Uac     cg   u
       C          G         A   ucauc  uau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_12723: 2961099-2961181 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-2b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-2b-3p

Accession	MIMAT0008951
Description	Drosophila virilis dvi-miR-2b-3p mature miRNA
Sequence	54 - UAUCACAGCCAGCUUUGAGGAGC - 76
Evidence	experimental Illumina [2]

Mature dvi-miR-2b-5p

Accession	MIMAT0032075
Description	Drosophila virilis dvi-miR-2b-5p mature miRNA
Sequence	9 - UUCUUCAAAGUGGUUGUGAAAUG - 31
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372