Stem-loop pta-MIR1315

Accession

MI0009712

Description

Pinus taeda pta-MIR1315 precursor miRNA

Sequence

gucaaggauuuggaggcccgucagguucccaaccgaguccgggaccaucugcagacuggagcaccagcccaggacaaggcuuuggaggccggucagguucccaaccgaguccgggaccaucugcagacuggagcacucuuccaggucaaggauuUGGAGGCCUGUCAGGUUCCCAaccgaguccgggacuau
(((..((((((((.((((.(.((((..((...((((((((..((((.((((((((((((....))))(((.((((..((..((((.((((.....)))).))))))..)))))))....)))))))).(((((.....)))))))))..)))))))).)))))).).))..))...))))))))..)))...

Structure

---   aa        --a  --  c u    uu  caa        gg    ---------------a        cuggagcaccag   a    aa  cu    a    g 
   guc  ggauuugg   gg  cc g cagg  cc   ccgagucc  gacc                ucugcaga            ccc ggac  gg  uugg ggcc g
   |||  ||||||||   ||  || | ||||  ||   ||||||||  ||||                ||||||||            ||| ||||  ||  |||| |||| u
   cag  ccugagcc   CC  GG C GUCC  GG   GGUuuagg  cugg                agacgucu            ggg ccug  cc  aacc uugg c
uau   gg        aAC  UU  A U    --  --A        aa    accuucucacgagguc        --------acca   -    ag  --    c    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR1315

• Accession: MIMAT0009132
• Description: Pinus taeda pta-miR1315 mature miRNA
• Sequence: 155 - UGGAGGCCUGUCAGGUUCCCA - 175
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584