miRBase entry: lgi-let-7

Stem-loop lgi-let-7


Accession
MI0010143
Description
Lottia gigantea lgi-let-7 precursor miRNA


Sequence

aaucuuuugugaauucggauUGAGGUAGUAGGUUGUAUAGUUgagaauuacaccuagacuggcgaacuguacaaccuucuagcuuucccugagucacaaac
.....(((((((.(((((...(((.(((.(((((((((((((........(.((......)).)))))))))))))).))).)))...)))))))))))).

Structure
aaucu       a     auU   G   U             gagaauua a  ua 
     uuuguga uucgg   GAG UAG AGGUUGUAUAGUU        c cc  g
     ||||||| |||||   ||| ||| |||||||||||||        | ||   
     aaacacu gaguc   uuc auc uccaacaugucaa        g gg  a
----c       -     ccu   g   u             -------- c  uc 


Annotation confidence Not enough data
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Genome context
KB200869.1: 2791958-2792058 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lgi-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lgi-let-7

Accession MIMAT0009604
Description Lottia gigantea lgi-let-7 mature miRNA
Sequence 21 - UGAGGUAGUAGGUUGUAUAGUU - 42
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68