Stem-loop aqu-mir-2015

Accession

MI0010223

Description

Amphimedon queenslandica aqu-mir-2015 precursor miRNA

Sequence

7951 reads, 75447 reads per million, 9 experiments

ucucaugauguauugUCAUGUAUUGUGGAGGGGAGAgacuuuaaggaguagcuuuacugucuccaugagcucACCUCUCCAUCAUGCAUGACAaaacuagugagaugaug
((((((...((.(((((((((((.(((((((((.(((.(((...(((((((.....))).))))..)))))).))))))))).))))))))))).))..)))))).....

Structure

-----      gau  a           U         A   a   uaa    -   c 
     ucucau   gu uugUCAUGUAU GUGGAGGGG GAg cuu   ggag uag u
     ||||||   || ||||||||||| ||||||||| ||| |||   |||| ||| u
     agagug   ca aACAGUACGUA UACCUCUCC cuc gag   ccuc guc u
guagu      -au  a           C         A   -   -ua    u   a 

Annotation confidence Medium

Genome context

Unknown

Mature aqu-miR-2015-5p

• Accession: MIMAT0009688
• Description: Amphimedon queenslandica aqu-miR-2015-5p mature miRNA
• Sequence: 16 - UCAUGUAUUGUGGAGGGGAGA - 36
• Evidence: experimental ; 454 [1-2]

Mature aqu-miR-2015-3p

• Accession: MIMAT0009689
• Description: Amphimedon queenslandica aqu-miR-2015-3p mature miRNA
• Sequence: 73 - ACCUCUCCAUCAUGCAUGACA - 93
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197