Stem-loop aqu-mir-2016

Accession

MI0010224

Description

Amphimedon queenslandica aqu-mir-2016 precursor miRNA

Sequence

80594 reads, 330200 reads per million, 9 experiments

ugUAGAUUGGGCUUGGUCGGCAGAugauuaaaagagauuaaguuuuuguccuuuuucaaaagaagacacuagcuugaugcaacucuuaaaucUGCUGUCCAGUCUUAAUCUACAgg
(((((((((((.((((.((((((((......(((((((((((((..((((.((((....)))).))))..))))))))....)))))..)))))))).)))).)))))))))))..

Structure

--           C    U        gauuaa     ----        uu    c    u 
  ugUAGAUUGGG UUGG CGGCAGAu      aagag    auuaaguu  uguc uuuu c
  ||||||||||| |||| ||||||||      |||||    ||||||||  |||| ||||  
  ACAUCUAAUUC GACC GUCGUcua      uucuc    uaguucga  acag agaa a
gg           U    U        ----aa     aacg        uc    a    a 

Annotation confidence High

Genome context

Unknown

Mature aqu-miR-2016-5p

• Accession: MIMAT0009690
• Description: Amphimedon queenslandica aqu-miR-2016-5p mature miRNA
• Sequence: 3 - UAGAUUGGGCUUGGUCGGCAGA - 24
• Evidence: experimental ; 454 [1-2]

Mature aqu-miR-2016-3p

• Accession: MIMAT0009691
• Description: Amphimedon queenslandica aqu-miR-2016-3p mature miRNA
• Sequence: 93 - UGCUGUCCAGUCUUAAUCUACA - 114
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197