Stem-loop aqu-mir-2017

Accession

MI0010225

Description

Amphimedon queenslandica aqu-mir-2017 precursor miRNA

Sequence

2111 reads, 11845 reads per million, 9 experiments

uggaugagggguugAGUACACGGGGUAUGGGUAGUgcuucuagcaaggauuauaaucauaaaguccauuuuagcacUACCUGUGCACCUGUGUGCCCAaaccuauccauaucgaa
(((((.(((..(((.(((((((((((((((((((((((........(((((.((....)).))))).....)))))))))))))).))))))))).))).)))))))).......

Structure

-------     g   gg   A         -              ucuagcaa     a  a 
       uggau agg  uug GUACACGGG GUAUGGGUAGUgcu        ggauu ua u
       ||||| |||  ||| ||||||||| ||||||||||||||        ||||| ||  
       accua ucc  aAC CGUGUGUCC CGUGUCCAUcacga        ccuga au c
aagcuau     -   -a   C         A              ---uuuua     a  a 

Annotation confidence Medium

Genome context

Unknown

Mature aqu-miR-2017-5p

• Accession: MIMAT0009692
• Description: Amphimedon queenslandica aqu-miR-2017-5p mature miRNA
• Sequence: 15 - AGUACACGGGGUAUGGGUAGU - 35
• Evidence: experimental ; 454 [2]

Mature aqu-miR-2017-3p

• Accession: MIMAT0009693
• Description: Amphimedon queenslandica aqu-miR-2017-3p mature miRNA
• Sequence: 77 - UACCUGUGCACCUGUGUGCCCA - 98
• Evidence: experimental ; 454 [1-2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197