miRBase entry: aqu-mir-2020

Stem-loop aqu-mir-2020


Accession
MI0010228
Description
Amphimedon queenslandica aqu-mir-2020 precursor miRNA


Sequence

17250 reads, 170640 reads per million, 9 experiments
ugcUGGGUAGUGUGUCUUUUCGGAauacagucacaaaccagacugaccgguuucucauuaugaccggagcugacagguuucucauucCGGAAGGGCAUACUAACCAGCacu
((((((.(((((((((((((((((((.(((((........))))).((((((.........))))))((((....))))....))))))))))))))))))).))))))..

Structure
--      G                   acagucacaaaccagacuga      ucu 
  ugcUGG UAGUGUGUCUUUUCGGAau                    ccgguu   c
  |||||| |||||||||||||||||||                    ||||||   a
  aCGACC AUCAUACGGGAAGGCcuua                    ggccag   u
uc      A                   ----cucuuuggacagucga      uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature aqu-miR-2020-5p

Accession MIMAT0009698
Description Amphimedon queenslandica aqu-miR-2020-5p mature miRNA
Sequence 4 - UGGGUAGUGUGUCUUUUCGGA - 24
Evidence experimental
454 [1-2]

Mature aqu-miR-2020-3p

Accession MIMAT0009699
Description Amphimedon queenslandica aqu-miR-2020-3p mature miRNA
Sequence 88 - CGGAAGGGCAUACUAACCAGC - 108
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197