Stem-loop nve-mir-2024b

Accession

MI0010286

Description

Nematostella vectensis nve-mir-2024b precursor miRNA

Sequence

14576 reads, 10370 reads per million, 24 experiments

agugcuacugcuucAAAAUAUCGGUGUUGGGUAAAAggucacauuUUCAACAGUACCGAUAUUGUGAagcacguuugcaaauuaa
..(((.(((((((((.(((((((((((((...((((.......))))...))))))))))))).))))))).))..)))......

Structure

----ag   -u  -       A             GGU    gg 
      ugc  ac ugcuucA AAUAUCGGUGUUG   AAAA  u
      |||  || ||||||| |||||||||||||   ||||  c
      acg  ug acgaAGU UUAUAGCCAUGAC   UUuu  a
aauuaa   uu  c       G             AAC    ac 

Annotation confidence Medium

Genome context

scaffold_126: 84223-84307 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from nve-mir-2024b

Mature nve-miR-2024b-5p

• Accession: MIMAT0009761
• Description: Nematostella vectensis nve-miR-2024b-5p mature miRNA
• Sequence: 15 - AAAAUAUCGGUGUUGGGUAAAA - 36
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2024b-3p

• Accession: MIMAT0009762
• Description: Nematostella vectensis nve-miR-2024b-3p mature miRNA
• Sequence: 46 - UUCAACAGUACCGAUAUUGUGA - 67
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663