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miRBase entry: vun-MIR1507a
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
vun-MIR1507a
Accession
MI0010582
Description
Vigna unguiculata
vun-MIR1507a precursor miRNA
Literature search
1 open access papers
mention vun-MIR1507a
(1 sentences)
Sequence
guaguauuuggcagagguguauggagugagagaagggaaaaacgccuuugccgaucucaucgguucuuuuuuuccucUCUCAUUCCAUACAUCGUCUGacgaacguagc
......((((.((((((((((((((((((((((.((((((((.......((((((...))))))...)))))))))))))))))))))))))).)))).))))......CUGAUAUUUUCUUUGGUUAUCUAGCUGUAUGAGUAUUGUUUAAUAACAUCAUAAAGCUAGGUUACCGGAGUUAAAACCAGU
Structure
Error: Sequence and structure lengths do not match for vun-MIR1507a.
Annotation confidence
Not enough data
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Genome context
Unknown
Database links
Mature
vun-miR1507a
Accession
MIMAT0010089
Description
Vigna unguiculata
vun-miR1507a mature miRNA
Sequence
78 - UCUCAUUCCAUACAUCGUCUG - 98
Evidence
not_experimental
References
PubMed ID:
19084500
Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
"Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
"Biochem Biophys Res Commun (2009) 378:799-803