Stem-loop ssc-mir-215

Accession

MI0010687

Description

Sus scrofa ssc-mir-215 precursor miRNA

Literature search

19 open access papers mention ssc-mir-215
(67 sentences)

Sequence

13549234 reads, 5125.0 reads per million, 202 experiments

agagaugguguacaggaaaAUGACCUAUGAAUUGACAGACaauguggcuaaaucugUCUGUCAUUUCUGUAGGCCAAUAuucuguauaucucugcu
..(((.(((((((((((...((.((((((((.(((((((((((........)).))))))))).))).))))).))...))))))))))))))...

Structure

-ag   u           aaA  A     -   U         -  gug 
   aga gguguacagga   UG CCUAU GAA UGACAGACa au   g
   ||| |||||||||||   || ||||| ||| ||||||||| ||    
   ucu cuauaugucuu   AC GGAUG CUU ACUGUCUgu ua   c
ucg   -           AUA  C     U   U         c  aau 

Annotation confidence High

Genome context

chr10: 11786567-11786662 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-215

Mature ssc-miR-215-5p

• Accession: MIMAT0010192
• Description: Sus scrofa ssc-miR-215-5p mature miRNA
• Sequence: 20 - AUGACCUAUGAAUUGACAGAC - 40
• Evidence: experimental ; 454 [1], Illumina [2]

Mature ssc-miR-215-3p

• Accession: MIMAT0052604
• Description: Sus scrofa ssc-miR-215-3p mature miRNA
• Sequence: 57 - UCUGUCAUUUCUGUAGGCCAAUA - 79
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328