Stem-loop dre-mir-107b

Accession

MI0010843

Description

Danio rerio dre-mir-107b precursor miRNA mir-103

Gene
family

RF00129; mir-103

Literature search

5 open access papers mention dre-mir-107b
(11 sentences)

Sequence

2349 reads, 92 reads per million, 11 experiments

ucuggccacucugggcuucucuacaguguugccuuguagccuggugaucaAGCAGCAUUGUACAGGGCUUUcagcguguacagaac
((((..(((.(((((((.((.(((((((((((.(((..((...))...)))))))))))))).))))))..))).)))..))))..

Structure

--    gc   u   --    u  c           c   -ua  c 
  ucug  cac cug  ggcu cu uacaguguugc uug   gc  
  ||||  ||| |||  |||| || ||||||||||| |||   || u
  agac  gug gac  UCGG GA AUGUUACGACG Aac   ug  
ca    au   c   UU    -  C           -   uag  g 

Annotation confidence Not enough data

Genome context

chr17: 23573130-23573215 [+]

Mature dre-miR-107b

• Accession: MIMAT0011301
• Description: Danio rerio dre-miR-107b mature miRNA
• Sequence: 51 - AGCAGCAUUGUACAGGGCUUU - 71
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195