Stem-loop dre-mir-126b

Accession

MI0010848

Description

Danio rerio dre-mir-126b precursor miRNA mir-126

Gene
family

RF00701; mir-126

Literature search

15 open access papers mention dre-mir-126b
(64 sentences)

Sequence

12137 reads, 663 reads per million, 11 experiments

gagucuuaccggccucacgguuCAUUAUUACUUUUGGUACGCGcuaugccacucucaacUCGUACCGUGAGUAAUAGUGCAcugugacuggugaacacaacua
..((.(((((((..(((((((.(((((((((((.(((((((.(...............).))))))).))))))))))).)))))))))))))))).......

Structure

-----ga  c       cc       u           U       C cuaugc 
       gu uuaccgg  ucacggu CAUUAUUACUU UGGUACG G      c
       || |||||||  ||||||| ||||||||||| ||||||| |      a
       ca agugguc  agugucA GUGAUAAUGAG GCCAUGC c      c
aucaaca  -       --       C           U       U aacucu 

Annotation confidence High

Genome context

chr21: 7240227-7240329 [-]

Mature dre-miR-126b-3p

• Accession: MIMAT0011306
• Description: Danio rerio dre-miR-126b-3p mature miRNA
• Sequence: 60 - UCGUACCGUGAGUAAUAGUGCA - 81
• Evidence: experimental ; 454 [1]

Mature dre-miR-126b-5p

• Accession: MIMAT0011307
• Description: Danio rerio dre-miR-126b-5p mature miRNA
• Sequence: 23 - CAUUAUUACUUUUGGUACGCG - 43
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195