Stem-loop sbi-MIR169n

Accession

MI0010879

Description

Sorghum bicolor sbi-MIR169n precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

4 open access papers mention sbi-MIR169n
(23 sentences)

Sequence

ggUAGCCAAGGAUGACUUGCCUAuauccucuaugaaggaucagcaaauaucgaggcuuugaguggucucaugggcagucuccuuggcuagccu
((((((((((((.((((.(((((((((((......)))))...........((((((......))))))))))))))))))))))))).))).

Structure

-   -         U    U      auccucuaugaaggaucagcaaauauc      uu 
 ggU AGCCAAGGA GACU GCCUAu                           gaggcu  g
 ||| ||||||||| |||| ||||||                           ||||||   
 ccg ucgguuccu cuga cgggua                           cucugg  a
u   a         -    -      ---------------------------      ug 

Annotation confidence Not enough data

Genome context

chr7: 62255445-62255537 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sbi-MIR169n

Mature sbi-miR169n

• Accession: MIMAT0011339
• Description: Sorghum bicolor sbi-miR169n mature miRNA
• Sequence: 3 - UAGCCAAGGAUGACUUGCCUA - 23
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556