Stem-loop sbi-MIR171j

Accession

MI0010883

Description

Sorghum bicolor sbi-MIR171j precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

2 open access papers mention sbi-MIR171j
(2 sentences)

Sequence

gcgagcgauauuggugagguucaaucagaucaucagaugauguauuuuaaauuuacaugcaugaaggugaauccccagggacUGAUUGAGCCGCGCCAAUAUCacuuc
..(((.((((((((((.(((((((((((.(((((..((((((((.........))))).)))...))))).(((....)))))))))))))).)))))))))).))).

Structure

gc   c          a           ----------a     -ag   -     uuu 
  gag gauauuggug gguucaaucag           ucauc   aug augua   u
  ||| |||||||||| |||||||||||           |||||   ||| |||||   a
  uuc CUAUAACCGC CCGAGUUAGUc           agugg   uac uacau   a
-c   a          G           agggaccccua     aag   g     uua 

Annotation confidence Not enough data

Genome context

chr4: 5806673-5806780 [-]

Mature sbi-miR171j

• Accession: MIMAT0011343
• Description: Sorghum bicolor sbi-miR171j mature miRNA
• Sequence: 83 - UGAUUGAGCCGCGCCAAUAUC - 103
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556