Stem-loop sbi-MIR390

Accession

MI0010887

Description

Sorghum bicolor sbi-MIR390 precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

3 open access papers mention sbi-MIR390
(17 sentences)

Sequence

ugAAGCUCAGGAGGGAUAGCGCCuaggaaaacacauagauuggagcuagccaugaggagaaagagagagagaggcagcagagcgagaugcaugugaaucucugaaucugcucaucucuuucucuuucucaagguugguucugucuaucaaucugaagcgcuaucuauccugagcuccac
((.(((((((((.(((((((((...(((......((((((.((((((((((.....((((((((((((((((.(.((((((..(((((........)))))....))))))).))))))))))))))))..))))))))))))))))...)))...))))))))).))))))))).)).

Structure

-  A         G         Cua   aaacac      u          augag                g c      --gc     gca 
 ug AGCUCAGGA GGAUAGCGC   gga      auagau ggagcuagcc     gagaaagagagagaga g agcaga    gagau   u
 || ||||||||| |||||||||   |||      |||||| ||||||||||     |||||||||||||||| | ||||||    |||||    
 ac ucgaguccu ucuaucgcg   ucu      uaucug ucuugguugg     cucuuucucuuucucu c ucgucu    cucua   g
c  c         a         aag   ---aac      -          ---aa                a -      aagu     agu 

Annotation confidence Not enough data

Genome context

chr1: 2876710-2876888 [+]

Mature sbi-miR390

• Accession: MIMAT0011347
• Description: Sorghum bicolor sbi-miR390 mature miRNA
• Sequence: 3 - AAGCUCAGGAGGGAUAGCGCC - 23
• Evidence: not_experimental

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716