Stem-loop cbr-mir-56

Accession

MI0010984

Description

Caenorhabditis briggsae cbr-mir-56 precursor miRNA

Sequence

uggaacggaacaucaguuucuguucuCAGGGGAUCCAGUUCCGGUUGUGCCucaucucaauacccagauggCACCCGUAUUGCUUCCUCUGAGaaucgacugcguaccgcauucag
((((.(((.((..(((((...((((((((((((..((((..(((..(((((..((((........)))))))))))).))))..)))))))))))).))))).)).)))..)))).

Structure

-    -a   a  au     ucu            UC    UC   UU     uc    caa 
 ugga  cgg ac  caguu   guucuCAGGGGA  CAGU  CGG  GUGCC  aucu   u
 ||||  ||| ||  |||||   ||||||||||||  ||||  |||  |||||  ||||    
 acuu  gcc ug  gucag   uaaGAGUCUCCU  GUUA  GCC  CACgg  uaga   a
g    ac   a  -c     --c            UC    -U   --     --    ccc 

Annotation confidence Not enough data

Genome context

chrX: 16963326-16963441 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbr-mir-56

Mature cbr-miR-56-5p

• Accession: MIMAT0011475
• Description: Caenorhabditis briggsae cbr-miR-56-5p mature miRNA
• Sequence: 27 - CAGGGGAUCCAGUUCCGGUUGUGCC - 51
• Evidence: experimental ; 454 [1]

Mature cbr-miR-56-3p

• Accession: MIMAT0011476
• Description: Caenorhabditis briggsae cbr-miR-56-3p mature miRNA
• Sequence: 72 - CACCCGUAUUGCUUCCUCUGAG - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074