Stem-loop cbr-mir-54a

Accession

MI0010985

Description

Caenorhabditis briggsae cbr-mir-54a precursor miRNA

Sequence

caggacgucuaagccgauccuuggcUGGGAUAUGAGCAAACGUGUACacgauacuuauucccugUACCCGUAUUCUCAUAUCUGAGCcaaggaucgucgcaaaaggcggugcuuccug
((((((((((..((((((((((((((.(((((((((...(((.(((((.((.......))..))))).)))...))))))))).))))))))))))..))...))))).....)))))

Structure

     -----     -aa  --            G         CAA   U     -c  ua 
cagga     cgucu   gc  cgauccuuggcU GGAUAUGAG   ACG GUACa  ga  c
|||||     |||||   ||  |||||||||||| |||||||||   ||| |||||  ||  u
guccu     gcgga   cg  gcuaggaacCGA UCUAUACUC   UGC CAUgu  cu  u
     ucgug     aaa  cu            G         UUA   C     cc  ua 

Annotation confidence Not enough data

Genome context

chrX: 16963746-16963863 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbr-mir-54a

Mature cbr-miR-54a-5p

• Accession: MIMAT0011477
• Description: Caenorhabditis briggsae cbr-miR-54a-5p mature miRNA
• Sequence: 26 - UGGGAUAUGAGCAAACGUGUAC - 47
• Evidence: experimental ; 454 [1]

Mature cbr-miR-54a-3p

• Accession: MIMAT0011478
• Description: Caenorhabditis briggsae cbr-miR-54a-3p mature miRNA
• Sequence: 65 - UACCCGUAUUCUCAUAUCUGAGC - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074