Stem-loop crm-mir-41

Accession

MI0011019

Description

Caenorhabditis remanei crm-mir-41 precursor miRNA

Sequence

162931 reads, 1565.0 reads per million, 9 experiments

gaaagguaaguuuaacagguccccaugaccuuGGUAGUUUUCCGCCGCAGUGAUAuaccaucaaucaaaacgauaUCACCGGGUGAAAAACUACCaaggucgggucaccuguccuuuu
((((((........((((((..((.((((((((((((((((.((((.(.(((((((................))))))).))))).))))))))))))))))))..))))))))))))

Structure

      uaaguuua      cc  a                C    G A       accauca 
gaaagg        acaggu  cc ugaccuuGGUAGUUUU CGCC C GUGAUAu       a
||||||        ||||||  || |||||||||||||||| |||| | |||||||        
uuuucc        ugucca  gg gcuggaaCCAUCAAAA GUGG G CACUaua       u
      --------      cu  -                A    - C       gcaaaac 

Annotation confidence High

Genome context

Crem_Contig1: 1740555-1740672 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-41

Mature crm-miR-41-5p

• Accession: MIMAT0056826
• Description: Caenorhabditis remanei crm-miR-41-5p mature miRNA
• Sequence: 33 - GGUAGUUUUCCGCCGCAGUGAUA - 55
• Evidence: experimental ; 454 [1]

Mature crm-miR-41-3p

• Accession: MIMAT0011504
• Description: Caenorhabditis remanei crm-miR-41-3p mature miRNA
• Sequence: 76 - UCACCGGGUGAAAAACUACC - 95
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074