Stem-loop crm-mir-35c-1

Accession

MI0011027

Description

Caenorhabditis remanei crm-mir-35c-1 precursor miRNA

Sequence

16838 reads, 159.0 reads per million, 9 experiments

ucggucggaucggaccuaCACUGGUUUUCGCUGCGGUGAUAcuucgagaaugauuaUCACCGGGUGAAAAUCAGGGCAgguccgauuccaccga
(((((.(((((((((((.(.((((((((((((.((((((((..((......)).)))))))))))))))))))).).))))))))))).)))))

Structure

     c           a A            G        cu  ga 
ucggu ggaucggaccu C CUGGUUUUCGCU CGGUGAUA  uc  g
||||| ||||||||||| | |||||||||||| ||||||||  ||   
agcca cuuagccuggA G GACUAAAAGUGG GCCACUau  ag  a
     c           C G            -        -u  ua 

Annotation confidence High

Genome context

Crem_Contig93: 222297-222390 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35c-1

Mature crm-miR-35c-1-5p

• Accession: MIMAT0056831
• Description: Caenorhabditis remanei crm-miR-35c-1-5p mature miRNA
• Sequence: 19 - CACUGGUUUUCGCUGCGGUGAUA - 41
• Evidence: experimental ; 454 [1]

Mature crm-miR-35c-3p

• Accession: MIMAT0011512
• Description: Caenorhabditis remanei crm-miR-35c-3p mature miRNA
• Sequence: 57 - UCACCGGGUGAAAAUCAGGGCA - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074