Stem-loop crm-mir-35c-2

Accession

MI0011067

Description

Caenorhabditis remanei crm-mir-35c-2 precursor miRNA

Literature search

1 open access papers mention crm-mir-35c-2
(1 sentences)

Sequence

16976 reads, 161.0 reads per million, 9 experiments

ccuauuaucuggucggaucggaccucCACUGAUUUUCGCUUCGGUGAUAuuucaagaacgauuaUCACCGGGUGAAAAUCAGGGCAgguccgauuccccauucccggcuggauugga
.(((..(((((((((((((((((((((.((((((((((((.((((((((..((......)).)))))))))))))))))))))).))))))))).........))))))))))))).

Structure

c   uu          ---------         -  A            U        uu  aa 
 cua  aucuggucgg         aucggaccu cC CUGAUUUUCGCU CGGUGAUA  uc  g
 |||  ||||||||||         ||||||||| || |||||||||||| ||||||||  ||   
 ggu  uaggucggcc         uagccuggA GG GACUAAAAGUGG GCCACUau  ag  a
a   --          cuuaccccu         C  -            -        -u  ca 

Annotation confidence Medium

Genome context

Crem_Contig93: 223885-224001 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35c-2

Mature crm-miR-35c-2-5p

• Accession: MIMAT0056832
• Description: Caenorhabditis remanei crm-miR-35c-2-5p mature miRNA
• Sequence: 27 - CACUGAUUUUCGCUUCGGUGAUA - 49
• Evidence: experimental ; 454 [1]

Mature crm-miR-35c-3p

• Accession: MIMAT0011512
• Description: Caenorhabditis remanei crm-miR-35c-3p mature miRNA
• Sequence: 65 - UCACCGGGUGAAAAUCAGGGCA - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074