Stem-loop crm-mir-44

Accession

MI0011089

Description

Caenorhabditis remanei crm-mir-44 precursor miRNA

Sequence

ugagagaauggccgauCUGGAUGUGCUCGUUAGUCAUagacgaaucacagaaaacagucauaUGACUAGAGACACAUUCAGCUuggccuggaucucaa
(((((....((((((.(((((((((.((.((((((((((((...............))).))))))))).))))))))))).))))))....))))).

Structure

-     gaau      u         C  G         -   gaauca 
 ugaga    ggccga CUGGAUGUG UC UUAGUCAUa gac      c
 |||||    |||||| ||||||||| || ||||||||| |||      a
 acucu    ccgguU GACUUACAC AG GAUCAGUau cug      g
a     aggu      C         -  A         a   acaaaa 

Annotation confidence Not enough data

Genome context

Crem_Contig1: 1324559-1324656 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-44

Mature crm-miR-44-5p

• Accession: MIMAT0011587
• Description: Caenorhabditis remanei crm-miR-44-5p mature miRNA
• Sequence: 17 - CUGGAUGUGCUCGUUAGUCAU - 37
• Evidence: experimental ; 454 [1]

Mature crm-miR-44-3p

• Accession: MIMAT0011588
• Description: Caenorhabditis remanei crm-miR-44-3p mature miRNA
• Sequence: 63 - UGACUAGAGACACAUUCAGCU - 83
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074