Stem-loop crm-mir-80

Accession

MI0011115

Description

Caenorhabditis remanei crm-mir-80 precursor miRNA

Sequence

1867878 reads, 17089.0 reads per million, 9 experiments

ggacacucuuucgcucAGCUUUCGACAUGAUUCUAAACAauacgucgagacaauguuguUGAGAUCAUUAGUUGAAAGCCGAAcgauuuugagauaucca
(((..(((..(((.((.((((((((((((((.((.(((((((.((....))..))))))).)))))))..))))))))).)).)))....)))...))).

Structure

-   -ca   --uu   c  A         --     U  A       -c  c 
 gga   cuc    ucg uc GCUUUCGAC  AUGAU CU AACAaua  gu g
 |||   |||    ||| || |||||||||  ||||| || |||||||  ||  
 ccu   gag    agc AG CGAAAGUUG  UACUA GA Uuguugu  ca a
a   aua   uuuu   A  C         AU     -  G       aa  g 

Annotation confidence High

Genome context

Crem_Contig431: 2337-2436 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-80

Mature crm-miR-80-5p

• Accession: MIMAT0011620
• Description: Caenorhabditis remanei crm-miR-80-5p mature miRNA
• Sequence: 17 - AGCUUUCGACAUGAUUCUAAACA - 39
• Evidence: experimental ; 454 [1]

Mature crm-miR-80-3p

• Accession: MIMAT0011621
• Description: Caenorhabditis remanei crm-miR-80-3p mature miRNA
• Sequence: 60 - UGAGAUCAUUAGUUGAAAGCCGAA - 83
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074