Stem-loop ppc-mir-63g

Accession

MI0011130

Description

Pristionchus pacificus ppc-mir-63g precursor miRNA

Sequence

gcccgucuccuuuucuccguucgccuguuacgucaucguccucauucggauagguacUAUGACUAACAGAGCGCACGAGGaaaaucuucggagcu
(((((.....((((((.(((.(((((((((.(((((.(((((.........))).)).))))))))))).))).))).))))))....))).)).

Structure

-  -   ucucc      c   u   -      c     c  -   cau 
 gc ccg     uuuucu cgu cgc cuguua gucau gu ccu   u
 || |||     |||||| ||| ||| |||||| ||||| || |||   c
 cg ggc     aaaaGG GCA GCG GACAAU CAGUA ca gga   g
u  a   -uucu      A   C   A      -     U  u   uag 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 914719-914813 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-63g

Mature ppc-miR-63g

• Accession: MIMAT0011642
• Description: Pristionchus pacificus ppc-miR-63g mature miRNA
• Sequence: 58 - UAUGACUAACAGAGCGCACGAGG - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074