Accession
MI0011141
Description
Pristionchus pacificus
ppc-mir-63c-3 precursor miRNA
Sequence
3742
reads,
215.0
reads per million, 12 experiments
gguacccgaaccauaauccaugugggguuCCAUUCGCAUGAGUUUCAUGGAcucgauucauagaucUAUGACACUCAAUGCGAGAUGGGaccucgguggaccauugguacgguacc
((((((.(.((((...(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))....)))).)))))))
((((((.(.((((...(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))....)))).)))))))
Structure
c a -uaa g - - U c gau
gguacc g acca uccau ugggguuCCAU UCGCAU GAGU UCAUGGA uc u
|||||| | |||| ||||| ||||||||||| |||||| |||| ||||||| ||
ccaugg c uggu aggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag c
- a uacc - G A C - aua
Annotation confidence
High
Do you think this miRNA is real?
Genome context
ABKE03000073.1: 892918-893033 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-63c-3
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-63c-5p
| Accession | MIMAT0056922 |
| Description | Pristionchus pacificus ppc-miR-63c-5p mature miRNA |
| Sequence | 30 - CCAUUCGCAUGAGUUUCAUGGA - 51 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-63c-3p
| Accession | MIMAT0011651 |
| Description | Pristionchus pacificus ppc-miR-63c-3p mature miRNA |
| Sequence | 67 - UAUGACACUCAAUGCGAGAUGGG - 89 |
| Evidence |
experimental
454 [1] |
References
|
