Stem-loop ppc-mir-63c-4

Accession

MI0011142

Description

Pristionchus pacificus ppc-mir-63c-4 precursor miRNA

Sequence

3742 reads, 215.0 reads per million, 12 experiments

gguacccgaaccauaauccaugugggguuCCAUUCGCAUGAGUUUCAUGGAcucgauucauagaucUAUGACACUCAAUGCGAGAUGGGaccucgguggaccaaugguucgguacc
((((((.(((((((..(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))...)))))))))))))

Structure

      c       -aa     g           -      -    U       c  gau 
gguacc gaaccau   uccau ugggguuCCAU UCGCAU GAGU UCAUGGA uc   u
|||||| |||||||   ||||| ||||||||||| |||||| |||| ||||||| ||    
ccaugg cuuggua   aggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag   c
      -       acc     -           G      A    C       -  aua 

Annotation confidence High

Genome context

ABKE03000073.1: 892769-892884 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-63c-4

Mature ppc-miR-63c-5p

• Accession: MIMAT0056922
• Description: Pristionchus pacificus ppc-miR-63c-5p mature miRNA
• Sequence: 30 - CCAUUCGCAUGAGUUUCAUGGA - 51
• Evidence: experimental ; 454 [1]

Mature ppc-miR-63c-3p

• Accession: MIMAT0011651
• Description: Pristionchus pacificus ppc-miR-63c-3p mature miRNA
• Sequence: 67 - UAUGACACUCAAUGCGAGAUGGG - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074