Stem-loop ppc-let-7

Accession

MI0011149

Description

Pristionchus pacificus ppc-let-7 precursor miRNA

Literature search

15 open access papers mention ppc-let-7
(126 sentences)

Sequence

9111 reads, 406.0 reads per million, 12 experiments

gcgaccgagcuccugcUGAGGUAGUAGGUUGUAUAGUUcggaauaauaccaacuguaucaauuggugaaaCUGUACAACCUGUCUAGCUUGCCaggcaucgcccaguugcg
((((((((...((((.((((.(((((((((((((((((........((((((.((...)).)))))).)))))))))))))).))).)))).))))..)))....))))).

Structure

-     ----   gcu    c    G   -              cggaauaa      c  u 
 gcgac    cga   ccug UGAG UAG UAGGUUGUAUAGUU        uaccaa ug  
 |||||    |||   |||| |||| ||| ||||||||||||||        |||||| || a
 cguug    gcu   ggaC GUUC AUC GUCCAACAUGUCaa        gugguu ac  
g     accc   -ac    C    G   U              -------a      a  u 

Annotation confidence High

Genome context

ABKE03000119.1: 942519-942629 [-]

Mature ppc-let-7-5p

• Accession: MIMAT0011657
• Description: Pristionchus pacificus ppc-let-7-5p mature miRNA
• Sequence: 17 - UGAGGUAGUAGGUUGUAUAGUU - 38
• Evidence: experimental ; 454 [1]

Mature ppc-let-7-3p

• Accession: MIMAT0056926
• Description: Pristionchus pacificus ppc-let-7-3p mature miRNA
• Sequence: 71 - CUGUACAACCUGUCUAGCUUGCC - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074