Accession
MI0011150
Description
Pristionchus pacificus
ppc-mir-63a precursor miRNA
Sequence
136734
reads,
9907.0
reads per million, 12 experiments
ucucuccccucuaauccccccuuagccguccCUUCUCGGCUUUGGUUGUCAUUGUcuacuugaagagaacUAUGACACUGAAGCGAGAUGGUacggcgaggggaggaggaagagggaggg
.(((((((.(((..(((((((((.(((((.((.(((((.(((((((.(((((.((((........)).)).))))))))))))))))).)).))))))))))).)))...))))))))))
.(((((((.(((..(((((((((.(((((.((.(((((.(((((((.(((((.((((........)).)).))))))))))))))))).)).))))))))))).)))...))))))))))
Structure
u c -aa - a c U G U U - acu cucuccc ucu ucc ccccuu gccgu cC UCUCG CUUUGGU GUCAU GU cu u ||||||| ||| ||| |||||| ||||| || ||||| ||||||| ||||| || || gggaggg aga agg ggggag cggca GG AGAGC GAAGUCA CAGUA ca ga g - - agg a - U U - - U a gaa
Annotation confidence
High
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Genome context
ABKE03000119.1: 561812-561931 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-63a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-63a-5p
| Accession | MIMAT0056927 |
| Description | Pristionchus pacificus ppc-miR-63a-5p mature miRNA |
| Sequence | 32 - CUUCUCGGCUUUGGUUGUCAUUGU - 55 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-63a-3p
| Accession | MIMAT0011658 |
| Description | Pristionchus pacificus ppc-miR-63a-3p mature miRNA |
| Sequence | 71 - UAUGACACUGAAGCGAGAUGGU - 92 |
| Evidence |
experimental
454 [1] |
References
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