Stem-loop ppc-mir-71a

Accession

MI0011151

Description

Pristionchus pacificus ppc-mir-71a precursor miRNA

Literature search

2 open access papers mention ppc-mir-71a
(18 sentences)

Sequence

30441 reads, 3011.0 reads per million, 12 experiments

gucgugucgacgaccgacgagcgaaggUGAAAGACCUGUUGGUAGUGAGACGaugaaauuuaauccuuucgUAUCACUACCCAGGCUUUCGCCcuugcuucgguacaauggcc
((((...)))).(((((..(((((.((((((((.((((..((((((((.((((...............)))).)))))))))))))))))))).)))))))))).........

Structure

gucgugucgacg     cg     a        A    UU        G    ugaaau 
            accga  agcga ggUGAAAG CCUG  GGUAGUGA ACGa      u
            |||||  ||||| |||||||| ||||  |||||||| ||||      u
            uggcu  ucguu CCGCUUUC GGAC  CCAUCACU Ugcu      a
---ccgguaaca     --     c        -    --        A    uuccua 

Annotation confidence High

Genome context

ABKE03000107.1: 286429-286541 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-71a

Mature ppc-miR-71a-5p

• Accession: MIMAT0011659
• Description: Pristionchus pacificus ppc-miR-71a-5p mature miRNA
• Sequence: 28 - UGAAAGACCUGUUGGUAGUGAGACG - 52
• Evidence: experimental ; 454 [1]

Mature ppc-miR-71a-3p

• Accession: MIMAT0056928
• Description: Pristionchus pacificus ppc-miR-71a-3p mature miRNA
• Sequence: 72 - UAUCACUACCCAGGCUUUCGCC - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074