Stem-loop ppc-mir-65

Accession

MI0011158

Description

Pristionchus pacificus ppc-mir-65 precursor miRNA

Sequence

ucaguccgcugcccuuuUAUGACACUGACCCCUCAAUGCGGauguauaacuggagauaccgcauugugggcagugucauccaagggcugagaaugag
(((.((....((((((..(((((((((.(((..((((((((((.(........).)).)))))))).))))))))))))..))))))...)).))).

Structure

-   g  cgcu      uU         A   CU        -  g aua 
 uca uc    gcccuu  AUGACACUG CCC  CAAUGCGG au u   a
 ||| ||    ||||||  ||||||||| |||  |||||||| || |    
 agu ag    cgggaa  uacugugac ggg  guuacgcc ua a   c
g   a  -agu      cc         -   -u        a  g ggu 

Annotation confidence Not enough data

Genome context

ABKE03000119.1: 316794-316890 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-65

Mature ppc-miR-65

• Accession: MIMAT0011665
• Description: Pristionchus pacificus ppc-miR-65 mature miRNA
• Sequence: 18 - UAUGACACUGACCCCUCAAUGCGG - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074