Stem-loop ppc-mir-63h

Accession

MI0011171

Description

Pristionchus pacificus ppc-mir-63h precursor miRNA

Sequence

ggauccccuagcccguccacuuuuucuccgcucgcuugagacgucgugguccucauugggaagguacUCCGACUUUCAAGCGAGCGUAGaaaaucgucggagcucaucc
((((.....((((((.(....((((((.(((((((((((((.((((.((((((........))).))).))))))))))))))))).))))))..).))).))).))))

Structure

    ccccu   -   u cacu      c             c    u   -   cau 
ggau     agc ccg c    uuuucu cgcucgcuugaga gucg ggu ccu   u
||||     ||| ||| |    |||||| ||||||||||||| |||| ||| |||    
ccua     ucg ggc g    aaaaGA GCGAGCGAACUUU CAGC Uca gga   g
    ----c   a   u --cu      U             -    C   u   agg 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 915178-915286 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-63h

Mature ppc-miR-63h

• Accession: MIMAT0011678
• Description: Pristionchus pacificus ppc-miR-63h mature miRNA
• Sequence: 68 - UCCGACUUUCAAGCGAGCGUAG - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074