Stem-loop ppc-mir-279

Accession

MI0011244

Description

Pristionchus pacificus ppc-mir-279 precursor miRNA

Literature search

1 open access papers mention ppc-mir-279
(4 sentences)

Sequence

augugcugugucguguucccugcuggguaugugucucagucaugcuauccuugucguuguacccaUGACUAGAUCCAUACUCAGCUgggcuuggcguugugcgu
((((((..(((((....(((.((((((((((.((((.(((((((.....(........)....))))))))))).)))))))))).)))..)))))..))))))

Structure

      ug     uguu   u          u    c       cuauc uug 
augugc  ugucg    ccc gcuggguaug gucu agucaug     c   u
||||||  |||||    ||| |||||||||| |||| |||||||     |    
ugcgug  gcggu    ggg CGACUCAUAC UAGA UCAGUac     g   c
      uu     --uc   U          C    -       -ccau uug 

Annotation confidence Low

Genome context

ABKE03000053.1: 567705-567808 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-279

Mature ppc-miR-279

• Accession: MIMAT0011736
• Description: Pristionchus pacificus ppc-miR-279 mature miRNA
• Sequence: 66 - UGACUAGAUCCAUACUCAGCU - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074