Stem-loop bdi-MIR167a

Accession

MI0011561

Description

Brachypodium distachyon bdi-MIR167a precursor miRNA

Literature search

2 open access papers mention bdi-MIR167a
(8 sentences)

Sequence

agagaaagcgUGAAGCUGCCAGCAUGAUCUAucugacuugugguggcaagugccacagcaaauucagcaacgccguggcuucggggccggc
...(((.(((((..(((((((.(((((((.....)).))))).)))).)))..))).))...)))......(((..((((....)))))))

Structure

-----------------------aga   --a  -   AA   -    G     -  U 
                          gaa   gc gUG  GCU GCCA CAUGA UC A
                          |||   || |||  ||| |||| ||||| || u
                          cuu   cg cac  uga cggu guguu ag c
cggccggggcuucggugccgcaacga   aaa  a   cg   a    g     c  u 

Annotation confidence Not enough data

Genome context

1: 6349045-6349135 [+]

Mature bdi-miR167a

• Accession: MIMAT0012176
• Description: Brachypodium distachyon bdi-miR167a mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669


2. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293