miRBase entry: isc-mir-275

Stem-loop isc-mir-275


Accession
MI0012273
Description
Ixodes scapularis isc-mir-275 precursor miRNA

Literature search
1 open access papers mention isc-mir-275
(4 sentences)

Sequence

gucuuuccucccguugccucuacgugcugcaucaggugcuugugacuacgcguucgaaagUCAGGUACCUGAAGUAGCGCGCGgaaggcuucggggcuggu
......(((((((..((((((.((((((((.(((((((((..(((((.((....))..)))))))))))))).)))))))).)).))))..)))))..)).

Structure
gucuuu  --     uu    -  a        a         ug     -a  c 
      cc  ucccg  gccu cu cgugcugc ucaggugcu  ugacu  cg g
      ||  |||||  |||| || |||||||| |||||||||  |||||  ||  
      gg  ggggc  cgga gG GCGCGAUG AGUCCAUGG  ACUga  gc u
-----u  uc     uu    a  C        A         --     aa  u 


Annotation confidence Not enough data
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Genome context
DS945001: 243239-243339 [-]

Database links

Mature isc-miR-275

Accession MIMAT0012693
Description Ixodes scapularis isc-miR-275 mature miRNA
Sequence 61 - UCAGGUACCUGAAGUAGCGCGCG - 83
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68