Stem-loop bmo-mir-33

Accession

MI0012293

Description

Bombyx mori bmo-mir-33 precursor miRNA

Literature search

4 open access papers mention bmo-mir-33
(5 sentences)

Sequence

1046 reads, 173 reads per million, 3 experiments

uaaagcgagaGUGCAUUGUAGUUGCAUUGCAccgguuccauuaacgugCAAUAUGACUACAAGGCAAAUCccgaauuagu
(((..((.((.(((.(((((((((.(((((((.(..........)))))))).))))))))).)))..)).))..)))..

Structure

--   ag  a  -G   A         C       c guuc 
  uaa  cg ga  UGC UUGUAGUUG AUUGCAc g    c
  |||  || ||  ||| ||||||||| ||||||| |     
  auu  gc CU  ACG AACAUCAGU UAACgug c    a
ug   aa  c  AA   G         A       - aauu 

Annotation confidence Medium

Genome context

NW_004582008.1: 9552124-9552203 [+]

Mature bmo-miR-33-5p

• Accession: MIMAT0013599
• Description: Bombyx mori bmo-miR-33-5p mature miRNA
• Sequence: 11 - GUGCAUUGUAGUUGCAUUGCA - 31
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-33-3p

• Accession: MIMAT0013600
• Description: Bombyx mori bmo-miR-33-3p mature miRNA
• Sequence: 49 - CAAUAUGACUACAAGGCAAAUC - 70
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415