Stem-loop bmo-mir-1175

Accession

MI0012300

Description

Bombyx mori bmo-mir-1175 precursor miRNA

Literature search

2 open access papers mention bmo-mir-1175
(2 sentences)

Sequence

1202 reads, 163 reads per million, 3 experiments

gugacagauuAAGUGGAGGUGUGAUCUCUUCAcuuuuuauguuuaaagUGAGAUUCAACUCCUCCAACUUAAcccuggaucg
....(((.(((((((((((.((((..(((.((((((........))))))))).)).)).))))).))))))..))).....

Structure

-guga   -a      -     U  -  UC   U      uua 
     cag  uuAAGU GGAGG GU GA  UCU CAcuuu   u
     |||  |||||| ||||| || ||  ||| ||||||    
     guc  AAUUCA CCUCC CA CU  AGA GUgaaa   g
gcuag   cc      A     U  A  -U   -      uuu 

Annotation confidence Medium

Genome context

NW_004581697.1: 1535938-1536019 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-1175

Mature bmo-miR-1175-5p

• Accession: MIMAT0013612
• Description: Bombyx mori bmo-miR-1175-5p mature miRNA
• Sequence: 11 - AAGUGGAGGUGUGAUCUCUUCA - 32
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-1175-3p

• Accession: MIMAT0013613
• Description: Bombyx mori bmo-miR-1175-3p mature miRNA
• Sequence: 49 - UGAGAUUCAACUCCUCCAACUUAA - 72
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415