Stem-loop rno-mir-665

Accession

MI0012606

Description

Rattus norvegicus rno-mir-665 precursor miRNA

Literature search

25 open access papers mention rno-mir-665
(61 sentences)

Sequence

4550 reads, 9.0 reads per million, 213 experiments

agaacagggucuccuugaggggccucugccucuauccaggauUAUCUUUUUAUGACCAGGAGGCUGAGGUCCCUUacaggcggccucuuacucu
......(((((.((((((((((((((.((((((.....((.((((......)))))).)))))).))))))))))).))).)))))........

Structure

--agaaca     u   -           u      aucca  a    CU 
        ggguc ccu ugaggggccuc gccucu     gg uUAU  U
        ||||| ||| ||||||||||| ||||||     || ||||   
        uccgg gga aUUCCCUGGAG CGGAGG     CC AGUA  U
ucucauuc     c   c           U      ----A  -    UU 

Annotation confidence Medium

Genome context

chr6: 133706457-133706550 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from rno-mir-665

Mature rno-miR-665-5p

• Accession: MIMAT0061428
• Description: Rattus norvegicus rno-miR-665-5p mature miRNA
• Sequence: 43 - UAUCUUUUUAUGACCAGGAGGCU - 65
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-665-3p

• Accession: MIMAT0012844
• Description: Rattus norvegicus rno-miR-665-3p mature miRNA
• Sequence: 55 - ACCAGGAGGCUGAGGUCCCUU - 75
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39