Stem-loop rno-mir-293

Accession

MI0012609

Description

Rattus norvegicus rno-mir-293 precursor miRNA

Literature search

4 open access papers mention rno-mir-293
(4 sentences)

Sequence

2085 reads, 14 reads per million, 135 experiments

cugugauACUCAAACUGUGUGACACUUUguuucuuuuggaagaAGUGCCGCAAAGUUUGCAGUGUuaccgau
..((((((((((((((.((((.((((((.((((....)))))))))).)))).)))))).))))))))....

Structure

--cu        -      G    A      g    u 
    gugauACU CAAACU UGUG CACUUU uuuc u
    |||||||| |||||| |||| |||||| ||||  
    cauUGUGA GUUUGA ACGC GUGAag aagg u
uagc        C      A    C      -    u 

Annotation confidence Not enough data

Genome context

chr1: 64537107-64537178 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rno-mir-293

Mature rno-miR-293-5p

• Accession: MIMAT0012847
• Description: Rattus norvegicus rno-miR-293-5p mature miRNA
• Sequence: 8 - ACUCAAACUGUGUGACACUUU - 28
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-293-3p

• Accession: MIMAT0017365
• Description: Rattus norvegicus rno-miR-293-3p mature miRNA
• Sequence: 44 - AGUGCCGCAAAGUUUGCAGUGU - 65
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39