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miRBase entry: eca-mir-1302e-6
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
eca-mir-1302e-6
Accession
MI0012761
Description
Equus caballus
eca-mir-1302e-6 precursor miRNA
Sequence
uuuaguauaaguauacacccccaugcaauguUUGGGAUAUACUUAUACUAAA
.((((((((((((((....((((.((...)).)))).)))))))))))))).
Structure
u cacc u a uuaguauaaguaua ccca gc |||||||||||||| |||| || a AAUCAUAUUCAUAU GGGU ug A ---A U u
Annotation confidence
Not enough data
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Genome context
chr10: 49039901-49039952 [-]
Database links
Mature
eca-miR-1302e
Accession
MIMAT0013010
Description
Equus caballus
eca-miR-1302e mature miRNA
Sequence
32 - UUGGGAUAUACUUAUACUAAA - 52
Evidence
not_experimental
References
PubMed ID:
19406225
In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
"Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
"Genomics (2009) 94:125-131