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miRBase entry: eca-mir-1291b
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
eca-mir-1291b
Accession
MI0012843
Description
Equus caballus
eca-mir-1291b precursor miRNA
Sequence
AGGCCCUGAAUCAAGACCAGCAGUuugcuguggcuguugguuucaagcaggagccg
.(((((((.....((((((((((((......))))))))))))....)))).))).
Structure
A - AAUCA ug GGC CCUG AGACCAGCAGUu c ||| |||| |||||||||||| ccg ggac uuugguugucgg u g a -gaac ug
Annotation confidence
Not enough data
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Genome context
chr20: 7735143-7735198 [-]
Database links
Mature
eca-miR-1291b
Accession
MIMAT0013096
Description
Equus caballus
eca-miR-1291b mature miRNA
Sequence
1 - AGGCCCUGAAUCAAGACCAGCAGU - 24
Evidence
not_experimental
References
PubMed ID:
19406225
In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
"Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
"Genomics (2009) 94:125-131