Stem-loop eca-mir-431

Accession

MI0012900

Description

Equus caballus eca-mir-431 precursor miRNA

Literature search

4 open access papers mention eca-mir-431
(24 sentences)

Sequence

17562 reads, 41.0 reads per million, 146 experiments

cguccugcgaggUGUCUUGCAGGCCGUCAUGCAGGccacacugacgguaacgUUGCAGGUCGUCUUGCAGGGCUUcucgcaagacgaca
((((.(((((((.((((((((((.((.(.((((((((........)))....))))).).)).)))))))))).))))))).))))...

Structure

---    c       U          C  U A     ----   aca 
   cguc ugcgagg GUCUUGCAGG CG C UGCAG    Gcc   c
   |||| ||||||| |||||||||| || | |||||    |||    
   gcag acgcucU CGGGACGUUC GC G ACGUU    ugg   u
aca    a       U          U  U G     gcaa   cag 

Annotation confidence Medium

Genome context

24: 43183836-43183924 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-431

Mature eca-miR-431-5p

• Accession: MIMAT0013156
• Description: Equus caballus eca-miR-431-5p mature miRNA
• Sequence: 13 - UGUCUUGCAGGCCGUCAUGCAGG - 35
• Evidence: not_experimental

Mature eca-miR-431-3p

• Accession: MIMAT0061118
• Description: Equus caballus eca-miR-431-3p mature miRNA
• Sequence: 53 - UUGCAGGUCGUCUUGCAGGGCUU - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131