Stem-loop osa-MIR2919

Accession

MI0013261

Description

Oryza sativa osa-MIR2919 precursor miRNA

Literature search

1 open access papers mention osa-MIR2919
(1 sentences)

Sequence

16292 reads, 75.0 reads per million, 118 experiments

gcggggagccgaugggccgcgggagaggagagagagagggagaggggagugggccgagccggcccaagagggAAGGGGGGGGGGGGAAAGAggacUUUUUAGGAUUUUUCUUUuuauaaaccuuuuuccacuuuguuuauuucuuuucaauuauuauuug
(((....(((....)))))).((((((((((((.(((((((((((((..(((((((...)))))))...(((((((((((....((((((....))))))....))))))))))).....))))))))).)))).))).)))))))))............

Structure

gcggggagccgaugggccgcg         -   g    -         agugggccgagccggcccaaga           GGGG      A 
                     ggagaggag aga agag ggagagggg                      gggAAGGGGGG    GGAAAG g
                     ||||||||| ||| |||| |||||||||                      |||||||||||    ||||||  
                     cuuuucuuu uuu uuuc ccuuuuucc                      uuUUUCUUUUU    UUUUUc g
---------guuuauuauuaa         a   g    a         -----------------aaaua           AGGA      a 

Annotation confidence Medium

Genome context

5: 9936879-9937038 [-]

Mature osa-miR2919-5p

• Accession: MIMAT0014050
• Description: Oryza sativa osa-miR2919-5p mature miRNA
• Sequence: 73 - AAGGGGGGGGGGGGAAAGA - 91
• Evidence: experimental ; cloned [1]

Mature osa-miR2919-3p

• Accession: MIMAT0056155
• Description: Oryza sativa osa-miR2919-3p mature miRNA
• Sequence: 96 - UUUUUAGGAUUUUUCUUU - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 20131478
   Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses
   "Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK"
   "Mol Genet Genomics (2009) 282:463-474